Local view for "http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/DB03775"
Predicate | Value (sorted: default) |
---|---|
rdfs:label |
"D-Dethiobiotin"
|
rdf:type | |
ns1:description |
"
experimental
This compound belongs to the heterocyclic fatty acids. These are fatty acids containing an heterocyclic attached to the acyl chain.
Heterocyclic Fatty Acids
Organic Compounds
Lipids
Fatty Acids and Conjugates
Heterocyclic Fatty Acids
Amino Fatty Acids
Imidazolidinones
Enolates
Carboxylic Acids
Polyamines
imidazolidinone
imidazolidine
carboxylic acid derivative
polyamine
enolate
carboxylic acid
organonitrogen compound
Mitogens
logP
0.72
ALOGPS
logS
-2.2
ALOGPS
Water Solubility
1.27e+00 g/l
ALOGPS
logP
0.73
ChemAxon
IUPAC Name
6-[(4R,5S)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid
ChemAxon
Traditional IUPAC Name
(4R,5S)-dethiobiotin
ChemAxon
Molecular Weight
214.2615
ChemAxon
Monoisotopic Weight
214.131742452
ChemAxon
SMILES
[H][C@@]1(C)NC(=O)N[C@]1([H])CCCCCC(O)=O
ChemAxon
Molecular Formula
C10H18N2O3
ChemAxon
InChI
InChI=1S/C10H18N2O3/c1-7-8(12-10(15)11-7)5-3-2-4-6-9(13)14/h7-8H,2-6H2,1H3,(H,13,14)(H2,11,12,15)/t7-,8+/m0/s1
ChemAxon
InChIKey
InChIKey=AUTOLBMXDDTRRT-JGVFFNPUSA-N
ChemAxon
Polar Surface Area (PSA)
78.43
ChemAxon
Refractivity
54.4
ChemAxon
Polarizability
23.15
ChemAxon
Rotatable Bond Count
6
ChemAxon
H Bond Acceptor Count
3
ChemAxon
H Bond Donor Count
3
ChemAxon
pKa (strongest acidic)
4.63
ChemAxon
pKa (strongest basic)
-1.8
ChemAxon
Physiological Charge
-1
ChemAxon
Number of Rings
1
ChemAxon
Bioavailability
1
ChemAxon
Rule of Five
true
ChemAxon
Ghose Filter
true
ChemAxon
PubChem Compound
445027
PubChem Substance
46504720
ChemSpider
392787
PDB
DTB
BE0001731
Biotin synthase
Escherichia coli (strain K12)
# Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284
# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
Biotin synthase
Coenzyme transport and metabolism
Dethiobiotin + sulfur + 2 S-adenosyl-L- methionine = biotin + 2 L-methionine + 2 5'-deoxyadenosine
bioB
None
5.13
38649.0
Escherichia coli (strain K12)
GenBank Gene Database
J04423
GenBank Protein Database
145425
UniProtKB
P12996
UniProt Accession
BIOB_ECOLI
Biotin synthetase
EC 2.8.1.6
>Biotin synthase
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC
PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV
KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV
RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA
FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK
DLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>1041 bp
ATGGCTCACCGCCCACGCTGGACATTGTCGCAAGTCACAGAATTATTTGAAAAACCGTTG
CTGGATCTGCTGTTTGAAGCGCAGCAGGTGCATCGCCAGCATTTCGATCCTCGTCAGGTG
CAGGTCAGCACGTTGCTGTCGATTAAGACCGGAGCTTGTCCGGAAGATTGCAAATACTGC
CCGCAAACGTCGCGCTACAAAACCGGGCTGGAAGCCGAGCGGTTGATGGAAGTTGAACAG
GTGCTGGAGTCGGCGCGCAAAGCGAAAGCGGCAGGATCGACGCGCTTCTGTATGGGCGCG
GCGTGGAAGAATCCCCACGAACGCGATATGCCGTACCTGGAACAAATGGTGCAGGGGGTA
AAAGCGATGGGGCTGGAGGCGTGTATGACGCTGGGCACGTTGAGTGAATCTCAGGCGCAG
CGCCTCGCGAACGCCGGGCTGGATTACTACAACCACAACCTGGACACCTCGCCGGAGTTT
TACGGCAATATCATCACCACACGCACTTATCAGGAACGCCTCGATACGCTGGAAAAAGTG
CGCGATGCCGGGATCAAAGTCTGTTCTGGCGGCATTGTGGGCTTAGGCGAAACGGTAAAA
GATCGCGCCGGATTATTGCTGCAACTGGCAAACCTGCCGACGCCGCCGGAAAGCGTGCCA
ATCAACATGCTGGTGAAGGTGAAAGGCACGCCGCTTGCCGATAACGATGATGTCGATGCC
TTTGATTTTATTCGCACCATTGCGGTCGCGCGGATCATGATGCCAACCTCTTACGTGCGC
CTTTCTGCCGGACGCGAGCAGATGAACGAACAGACTCAGGCGATGTGCTTTATGGCAGGC
GCAAACTCGATTTTCTACGGTTGCAAACTGCTGACCACGCCGAATCCGGAAGAAGATAAA
GACCTGCAACTGTTCCGCAAACTGGGGCTAAATCCGCAGCAAACTGCCGTGCTGGCAGGG
GATAACGAACAACAGCAACGTCTTGAACAGGCGCTGATGACCCCGGACACCGACGAATAT
TACAACGCGGCAGCATTATGA
PF06968
BATS
PF04055
Radical_SAM
function
cation binding
function
transition metal ion binding
function
iron ion binding
function
transferase activity
function
binding
function
transferase activity, transferring sulfur-containing groups
function
catalytic activity
function
sulfurtransferase activity
function
ion binding
function
biotin synthase activity
process
vitamin metabolism
process
water-soluble vitamin metabolism
process
physiological process
process
biotin metabolism
process
metabolism
process
biotin biosynthesis
process
cellular metabolism
BE0001271
ATP-dependent dethiobiotin synthetase BioD 1
Escherichia coli (strain K12)
# Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284
# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
ATP-dependent dethiobiotin synthetase BioD 1
Coenzyme transport and metabolism
ATP + 7,8-diaminononanoate + CO(2) = ADP + phosphate + dethiobiotin
bioD
Cytoplasm
None
5.64
24140.0
Escherichia coli (strain K12)
GenBank Gene Database
J04423
GenBank Protein Database
145427
UniProtKB
P13000
UniProt Accession
BIOD1_ECOLI
Dethiobiotin synthase
DTB synthetase
DTBS
EC 6.3.3.3
>Dethiobiotin synthetase
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ
RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG
WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP
PGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>660 bp
GTGAGTAAACGTTATTTTGTCACCGGAACGGATACCGAAGTGGGGAAAACTGTCGCCAGT
TGTGCACTTTTACAAGCCGCAAAGCGAGCAGGCTACCGGACGGCAGGTTATAAACCGGTC
GCCTCTGGCAGCGAAAAGACCCCGGAAGGTTTACGCAATAGCGACGCGCTGGCGTTACAG
CGCAACAGCAGCCTGCAGCTGGATTACGCAACAGTAAATCCTTACACCTTCGCAGAACCC
ACTTCGCCGCACATCATCAGCGCGCAAGAGGGCAGACCGATAGAATCATTGGTAATGAGC
GCCGGATTACGCGCGCTTGAACAACAGGCTGACTGGGTGTTAGTGGAAGGTGCTGGCGGC
TGGTTTACGCCGCTTTCTGACACTTTCACTTTTGCAGATTGGGTAACACAGGAACAACTG
CCGGTGATACTGGTAGTTGGTGTGAAACTCGGCTGTATTAATCACGCGATGTTGACTGCA
CAGGTAATACAACACGCCGGACTGACTCTGGCGGGTTGGGTGGCGAACGATGTTACGCCT
CCGGGAAAACGTCACGCTGAATATATGACCACGCTCACCCGCATGATTCCGCGCCGCTGC
TGGGAGAGATCCCCTGGCTTGCAGAAAATCCAGAAAATGCGGCAACCGGAAAGTACATAA
PF01656
CbiA
function
hydrolase activity
function
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
function
ligase activity, forming carbon-nitrogen bonds
function
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
function
glutaminase activity
function
nucleotide binding
function
cyclo-ligase activity
function
purine nucleotide binding
function
binding
function
adenyl nucleotide binding
function
cobyrinic acid a,c-diamide synthase activity
function
ATP binding
function
dethiobiotin synthase activity
function
catalytic activity
function
ligase activity
process
porphyrin biosynthesis
process
vitamin metabolism
process
water-soluble vitamin metabolism
process
cobalamin biosynthesis
process
physiological process
process
biotin metabolism
process
metabolism
process
heterocycle metabolism
process
biotin biosynthesis
process
cellular metabolism
process
porphyrin metabolism
BE0004052
ATP-dependent dethiobiotin synthetase BioD
Mycobacterium tuberculosis
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
ATP-dependent dethiobiotin synthetase BioD
Coenzyme transport and metabolism
ATP + 7,8-diaminononanoate + CO(2) = ADP + phosphate + dethiobiotin
bioD
None
4.92
22455.7
Mycobacterium tuberculosis
GeneCards
bioD
GenBank Gene Database
BX842577
GenBank Protein Database
2916953
UniProtKB
O06620
UniProt Accession
BIOD_MYCTU
Dethiobiotin synthase
DTB synthetase
DTBS
>Dethiobiotin synthetase
MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVT
QLAGLARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEP
GVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAA
SNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRNWVAGLVG
>1104 bp
ATGTCGGACGGCGCGGTGGTACGGGCATTGGTATTGGAGGCGCCGCGCAGGCTGGTCGTG
CGCCAGTACCGGCTGCCGCGCATCGGCGATGATGACGCACTAGTGCGAGTAGAGGCCTGC
GGGCTGTGCGGCACCGATCACGAGCAATACACGGGCGAGCTGGCCGGTGGGTTTGCCTTC
GTACCTGGCCACGAGACGGTCGGGACGATTGCGGCCATCGGTCCGCGGGCGGAGCAGCGG
TGGGGCGTGTCGGCCGGCGACCGAGTAGCCGTCGAGGTATTCCAGTCGTGTCGGCAGTGC
GCTAACTGTCGTGGCGGCGAGTACCGGCGTTGTGTACGGCATGGCCTCGCTGACATGTAC
GGGTTCATCCCGGTTGACCGAGAGCCTGGCCTGTGGGGCGGTTACGCCGAATATCAGTAC
CTGGCGCCGGATTCGATGGTGTTGCGGGTGGCCGGTGACCTCAGCCCGGAAGTGGCCACC
TTGTTCAACCCGCTGGGGGCGGGAATACGTTGGGGAGTAACGATTCCCGAAACCAAACCG
GGCGACGTCGTGGCGGTGCTGGGTCCAGGAATCCGGGGGCTGTGCGCCGCCGCGGCGGCA
AAAGGGGCCGGTGCCGGGTTCGTGATGGTGACCGGGTTGGGACCCCGTGACGCCGACCGG
TTGGCGCTGGCGGCACAGTTCGGAGCCGACCTCGCCGTCGATGTTGCGATCGATGACCCG
GTCGCCGCCCTGACCGAACAGACCGGTGGGCTGGCAGACGTCGTTGTCGACGTGACCGCC
AAGGCGCCAGCGGCATTCGCACAGGCGATAGCGCTAGCCCGGCCCGCCGGGACCGTTGTT
GTCGCCGGCACCCGGGGCGTGGGCAGCGGGGCACCGGGATTTTCGCCCGACGTCGTTGTG
TTCAAGGAGCTGCGTGTGCTTGGCGCCCTCGGCGTAGACGCCACCGCCTACCGGGCCGCG
CTTGATCTGTTGGTGTCCGGTCGATACCCCTTCGCAAGCCTGCCTCGCCGCTGCGTGCGG
CTCGAAGGCGCCGAGGATCTGCTGGCTACCATGGCCGGTGAACGCGACGGTGTCCCGCCT
ATCCACGGAGTGCTCACACCATGA
function
purine nucleotide binding
function
adenyl nucleotide binding
function
ATP binding
function
ligase activity
function
ligase activity, forming carbon-nitrogen bonds
function
binding
function
catalytic activity
function
cyclo-ligase activity
function
dethiobiotin synthase activity
function
nucleotide binding
process
vitamin metabolism
process
physiological process
process
water-soluble vitamin metabolism
process
metabolism
process
cellular metabolism
process
biotin metabolism
process
biotin biosynthesis
"
|
ns1:drugCategory | |
owl:sameAs |
All properties reside in the graph file:///home/swish/src/ClioPatria/guidelines/drugbank_small.nt
The resource does not appear as an object